Releases Notes from Github Repos for Milestone: 8.2.1

cdat_info

Closed Issues

enhancement

• **: need to turn off logging (#38, #40, #41)
• **: Need mecanism to track cdat packages installed and othe rprovenance (#5)

Merged Pull Requests

• #39: Try new conda recipes

Known Bugs

No known issues!

cdms

Closed Issues

bug

• **: AttributeError with cdscan (#399)

pending-release

• **: Attempt to import numpy.ma.rank failing with numpy 1.18.1 (#389)
• **: Problems with reading “big” arrays (>8.1Gb) (#389)
• **: While importing cdms2 error pops up: ImportError: cannot import name ‘rank’
• **: Problems with udunits in CDAT82

Merged Pull Requests

• #387: replaced numpy.rank() with numpy.ndim(), adding test_setdimattribute*

Known Bugs

No known issues!

vcs

Closed Issues

bug

• **: vcs 3D rotating globe animation not working properly
• **: an update triggers continents back on (#398)
• **: transparency does not work for text
• **: text disappear in png with bg=False
• **: vector linewidth not working
• **: createprojection fails if ‘polar’ template is chosen
• **: manageElements.py setLineAttributes doesn’t work
• **: vcs cannot go back into interact mode

duplicate

• **: wind barb support
• **: dv3d plotting ad changing attributes breaks dv3d

enhancement

• **: 1D plot do not seem to show time/level if available
• **: Developments with documentation

fixed in a branch

• **: Automatic xticlabels2 and yticlabels2 don’t work

invalid

• **: Plots sometimes render text twice
• **: bg=True freaks out on OSMesa builds
• **: Make VCS color palettes easier to edit/add
• **: Several marker problems/differences in 2.1.0 (compared to 1.5.1)
• **: x/yaxisconvert not respected anymore.
• **: Bring back x.colormapgui() (and add color related resources on the web/wiki)?
• **: after first plot you cannot switch between bg or fg

Merged Pull Requests

• #406: Rtd again
• #411: Projected isofill bounds
• #417: Extra dims slider
• #445: Run tests with variants and fix flake8 failures
• #446: Add makefile

Known Bugs

Other

• axisconvert seems to force datawc to be in converted units
• Canvas plot with ratio=”autot” results in interaction errors

cdutil

Closed Issues

Merged Pull Requests

• #27: Migrate to circle ci

Known Bugs

No known issues!

genutil

Closed Issues

bug

• **: Error in genutils.statistics.percentiles (#36, #40)

Merged Pull Requests

• #28: doesn’t dump file unless asked, reads good var in assert func and sav

Known Bugs

No known issues!

dv3d

Closed Issues

Merged Pull Requests

• #26: Pin mesalib libnetcdf nompi
• #27: Use makefile n matrix

Known Bugs

No known issues!

vcsaddons

Closed Issues

Merged Pull Requests

• #40: new baseline for newer vtk
• #43: Pin mesalib, add running tests with nompi and opempi libnetcdf, flix flake8
• #46: Use makefile n matrix

Known Bugs

No known issues!

wk

Closed Issues

Merged Pull Requests

• #13: add running tests with nompi, openmpi and mpich libnetcdf
• #14: add Makefile and use circleci 2.1 matrix

Known Bugs

No known issues!

Releases Notes from Github Repos for Milestone: 8.1

vcs

Closed Issues

bug

• **: template.tunits seems to be disabled
• **: portrait plot does not work with python 3 env
• **: cannot replace the default font
• **: text objects with prjection are broken
• **: vcs .addfont seems broken
• **: when 1d is flipped or 2 arrays are passed template shows min/max for xaxis not data
• **: Taylor Diagram with EzTemplate (#300)
• **: Taylor diagram loses y-axis with 2.12 version
• **: 3d_scalar seg faults on mac
• **: 1D plots are taking longer than expected (#334)

enhancement

• **: Color maps could look better

invalid

• **: Postscript files are truncated on Mac OS X Sierra

question

• **: Tick label size adjustment
• **: Plot creates new graphics method objects
• **: viewport error for polar map projection

Merged Pull Requests

• #118: otherwise will push on every commit
• #120: correct travis syntax
• #123: 121 missing value opacity
• #131: Doctest cleanup
• #295: Ez plot
• #297: Cdat logo
• #302: cdtime broken for py3
• #316: [WIP] Log axes 2d
• #317: fix #251
• #319: Test for fillarea concave.
• #378: Fix some places where the truncation fix was missed
• #389: Add support for the ‘reference’ attribute on the vector gm

Known Bugs

Other

b” * b’vector linewidth not working’” b” * b’template x/ymintics1 seems to be using line property of x/ytic1 for last label’” b” * b’text disappear in png with bg=False’” b” * b’Black png returned when using a vnc session’”

cdutil

Closed Issues

Merged Pull Requests

• #6: Documentation
• #7: Is monthly cal bug
• #8: add License files for conda-forge
• #22: Issu#136 region

Known Bugs

No known issues!

genutil

Closed Issues

enhancement

• **: Docstrings (#22, #21)

Merged Pull Requests

• #7: Documentation
• #8: add License files for conda-forge

Known Bugs

No known issues!

dv3d

Closed Issues

Merged Pull Requests

• #24: forcing 3.6 python

Known Bugs

No known issues!

vcsaddons

Closed Issues

enhancement

• **: parallelcoordinate plot fails if number of linecolors is greater than actual number of lines (#33)

Merged Pull Requests

• #18: Ez plot
• #19: almost all fixed
• #20: Fixed EzPlot tests.
• #38: Bad conda
• #39: no dowgrade

Known Bugs

No known issues!

cdms

Closed Issues

bug

• **: axis.clone does not clone anymore! (#272)
• **: Axis units in .attributes and .units not equal (#267)
• **: nightlies broken
• **: Shapes not aligned rrror when appending to a FileVariable in Python 3
• **: regrid broken?
• **: nc4 classic file can’t be edited

cdms2

• **: cdms not using latest netcdf.

critical

• **: Extreme CPU load ~3100% during variable read from netcdf
• **: OSX ESMF authentication

enhancement

• **: Propagate errors with context management
• **: cdms2 (NetCDF) maximum dimension name length is 256
• **: cdms2 axis cannot have dictionary as attribute values

help wanted

• **: cdms logo

question

• **: Augment cdms2.createAxis to accept “missing” argument

Merged Pull Requests

• #72: Verify that MV2.mean() works properly
• #74: Adds support for **kwargs to MV2 operation classes
• #75: added script to log in myproxy, needed for opendap esgf
• #76: Fix #7 NC_STRING Support.
• #80: otherwise will push on every commit
• #82: correct travis syntax
• #83: Glib2 travis issue [WIP]
• #84: missing_value = ‘N/A’ led to fail
• #86: Issue32
• #88: Adding badges in readme
• #89: Issue78 strvar
• #90: Fix #87 ESMF periodicity
• #91: add test for conda-forge
• #92: Circleci mac
• #93: Condaforgetest
• #95: Revert “Condaforgetest”
• #96: Revert “add test for conda-forge”
• #97: issue #4 a.mean() fixed!
• #210: removing dropbox code from run_tests.py
• #211: Fix cdscan using opendap
• #212: change conda-build
• #213: Cdms2
• #222: Fixesmf
• #223: Cdmsdocsmerge
• #224: Fixesmf
• #227: Issue#225
• #230: Issue#225
• #297: Docstanya
• #298: Docstanya
• #301: V3.1.0 1
• #302: upload 3.7
• #303: recompile liners on mac

Known Bugs

Other

b” * b’ESMF conservative blending when you have missing values’” b” * b’netcdf string variables unable to be read’” b’ * b”cdms2 seg faults when using unknown '+rw' mode for opening a file”’

cdtime

Closed Issues

bug

• **: On mac, py27, cdat8 and nightly fail when installed from cdat channels
• **: mac nightlies seem broken
• **: time comparisons

enhancement

• **: cdtime nightly not generated.

Merged Pull Requests

• #13: Issue 10 exception
• #14: change conda_upload.sh to use variant in conda build
• #15: update conda-upload to use conda-build 3.2.2
• #36: V3.1.0 1
• #37: V3.1.2

Known Bugs

No known issues!

Releases Notes from Github Repos for: 8.0

cdat

Closed Issues

Bug

• Bug: lambert azimuthal proj seem to ignore user custom parameters
• Bug: meshfill with missing values in mesh broken.
• Bug: BUG: vcs.Canvas.switchfonts() doesn’t work
• Bug: cdms cannot read in all requested data on some climo files
• Bug: VCS/VTK warnings and UV-CDAT logo missing in pdf/ps output files
• Bug: PCMDI tools problem - lats
• Bug: Plot vector for sub-region: “datawc” for vector plot not working
• Bug: vtk seg fault on (my) ubuntu 15.10
• Bug: cdms2.getGrid()/setGrid() doesn’t work
• Bug: mean broken on MV array
• Bug: projections still broken
• Bug: text alignment seems a bit off
• Bug: CDMS2/MV2.newaxis doesn’t work
• Bug: canvas.png writes a PNG with labels off if bg=0
• Enhancement: numpy.NewAxis broken

Build

• Enhancement: Build on OS X 10.11 (with XCode 7.x)

Enhancement

• Enhancement: Suppress numpy warnings?
• Enhancement: Status of ESMPy in UV-CDAT ?

VCS

• **: Implement gettextextent
• **: vcs.Gfb.rename() seems to destroy the object that it’s renaming
• **: Discuss usefulness of outlines in plots

cdms2

• **: cdsm2 createGenericGrid need to be generic

Merged Pull Requests

Known Bugs

Other

• opendap
• DV3D/VCS plot error
• Unable to load Ensembles dimension from Grads Ctl file

cdms

Closed Issues

Can’t reproduce

• **: Suppress numpy warnings?

bug

• **: cdms2 file variable does not support var.ndim
• **: division on loading loses grid (#192)
• **: Cdunif getAttribute returns incomplete value
• **: useNetCDF3 does not work
• **: mac python 3 seems broken
• **: numpy.NewAxis broken
• **: esmf regridder fills in data where non should be
• **: cdscan path needs a patch
• **: Unicode strings for axis names
• **: regrid2 vertical regridder seems broken
• **: File open fails when lon and lat are variables (not dimensions)
• **: can’t delete file attribute

cdms2

• **: test_Esmf_3x4_6x8_Conserve_Masked failed on MacOS (py2 & py3)
• **: Add NC_String type for netCDF file attributes
• **: conda seems to only upload numpy 1.11
• **: python 3 remaining fail tests
• **: CDMS2 fails during init for netCDF variable of type unsigned byte
• **: not all types are written correctly or even written

critical

• **: cdms should report more details to anonymous usage sfotware

enhancement

• **: osx now in nesii/label/dev-emsf
• **: remove libcf?
• **: data not tagged with lat , long
• **: cdms2 can only open cdscanned http files from the directory the file is at
• **: Building/testing modifies source tree

help wanted

• **: CDMS2 2.12 wrongly scaling variable

Merged Pull Requests

Known Bugs

Other

• ESMF conservative blending when you have missing values
• Can 2.8.0 still create netCDF3 Classic ?
• cdms2.setAutoBounds(‘off’) problem (OK with ‘on’)
• netcdf string variables unable to be read
• cdms2 seg faults when using unknown ‘+rw’ mode for opening a file

vcs

Closed Issues

bug

• **: taylordiagram . line_color should accept strings
• **: vcs gettextextent broken
• **: template.scalefont creates never removed textorientation object
• **: Coordinates displayed in interactive mode are not good (2.12 and earlier)
• **: fillarea creates black area
• **: meshfill wrap seems broken
• **: GetMaxNorm error when available vector data area is ‘smaller’ than vector graphics method?
• **: tayore diagrams std label always centered on template.datawc but should be centered on actual quadrans length
• **: vcs init seems to fail using ${HOME} correctly

enhancement

• **: Print a helpful warning when using x.plot and DISPLAY is not set
• **: need a function to get the exact box around text not just bounding box
• **: Idea for canvas reinitialization: x.reinit()
• **: vcs.removeobject doex NOT error exit if trying to remove a non vcs object
• **: taylordiagram should be able to draw ids only in legend not on plot
• **: drawMarker and legend cannot not draw a line.
• **: taylor diagrams lack control of “standard deviation” label
• **: unexpected warning message.
• **: Remarks about vcs.download_sample_data_files
• **: Building/testing modifies source tree
• **: streamlines
• **: we should be able to stop font scaling at some number for the drawLinesandMarkers

invalid

• **: 1d flip with only 1 axes seems broken
• **: x.plot(s,box) error

Merged Pull Requests

Known Bugs

Other

• 3d broken?
• axisconvert works only for “linear”
• text disappear in png with bg=False
• Black png returned when using a vnc session

cdutil

Closed Issues

bug

• **: cdutil.generateLandSeaMask returns missing values in maks (#19)

Merged Pull Requests

Known Bugs

No known issues!

genutil

Closed Issues

enhancement

• **: FutureWarning in genutil.minmax (uvcdat 2.12)

Merged Pull Requests

Known Bugs

No known issues!

vcsaddons

Closed Issues

bug

• **: polar list does not list all objects
• **: polar magnitude_tick_angle does not respect theata_offset
• **: polar plots seems to stack points with magnitude greater than max required at the edge of the plot
• **: polar plots crashes if a value is less than thre minmum magnitude

enhancement

• **: polar should have a slot to prevent setting bad attributes

Merged Pull Requests

Known Bugs

No known issues!

cdtime

Closed Issues

bug

• **: cdtime issue exception that seem to have no base class (python2 maybe 3)

invalid

• **: latest cdtime broken on py3

Merged Pull Requests

Known Bugs

No known issues!

Releases Notes from Github Repos for Milestone: 2.12

uvcdat

Closed Issues

Bug

• Bug: vcs.plot(iso) creates text object that are not removed after clear

Enhancement

• Enhancement: logger should cache records until server acknowledge success
• Enhancement: submitPing should cache datsa in case server is dead

Merged Pull Requests

Known Bugs

Other

• (python:26831): Gtk-WARNING **: Unable to find default local directory monitor type
• DV3D/VCS plot error

cdms

Closed Issues

bug

• **: Undefined local variable with regrid2.crossSection.get_latitude_wts_bnds (#154)
• **: crossRegrid does not return an MV2
• **: nc4 classic file can’t be edited
• **: netCDF4 file not readable by cdms2 (#150)

Merged Pull Requests

• #142: add mask to transient variable

Known Bugs

Other

• cdscan path needs a patch

vcs

Closed Issues

bug

• **: taylordiagram markers copied over from default andaffect default
• **: taylordiagram won’t plot in jupyter
• **: taylordiagram drawing line between markers broken (clor)
• **: Catastrophic 2.8 and 2.10 x.plot failure on our new CentOS 7 server
• **: pngs do not clear object properly in some cases
• **: template.scalefont broken (#207)
• **: 3d_scalar seg faults on mac
• **: taylordiagram adds an extra marker if marker attributes set manually

enhancement

• **: Color maps could look better (#244)
• **: drawLinesAndTemplate could use new functionalities
• **: taylordiagram should draw legend

invalid

• **: isof.fillareacolors does not like rgb tuple in list of colors

Merged Pull Requests

Known Bugs

Other

• Colormap for difference or anomaly field needs adjustment

Unable to find milestone 2.12

cdat_info

Closed Issues

enhancement

• **: need to turn off logging
• **: Need mecanism to track cdat packages installed and othe rprovenance (#5)

Merged Pull Requests

Known Bugs

No known issues! Unable to find milestone 2.12

Releases Notes from Github Repos for Milestone: 2.10

uvcdat

Closed Issues

Bug

• Bug: Conda install failing on OS X

Enhancement

• Enhancement: ask anonymous should periodically ask again in case it’s no
• Enhancement: Rebuild all packages with conda >= 2.0?
• Enhancement: cdat_info has debug print statement

Merged Pull Requests

Known Bugs

Other

• cdms2.open fails on an xml file with “invalid” attributes
• ctest does not seem to post to cdash anymore
• vtk seg fault on (my) ubuntu 15.10
• DV3D/VCS plot error
• Unable to load Ensembles dimension from Grads Ctl file
• dv3d cannot go back into interact mode
• dv3d plotting ad changing attributes breaks dv3d
• Fix setup_runtime.sh script for DMG

cdms

Closed Issues

bug

• **: cdutil.ANNUALCYCLE.departures lopping off the final month
• **: https dap broken
• **: ESMF linear regridding fails with periodic data
• **: test_fillvalue.py failed
• **: cdsm2 createGenericGrid need to be generic
• **: mean broken on MV array
• **: No boundary data error
• **: weird cdscan error
• **: implement context management with the with keyword
• **: netcdf string variables unable to be read
• **: missing_value attribute in file not respected when reading in

critical

• **: Update cdms2 to deal with all common datatypes (uint8, uint16, char, str etc)
• **: Upgrade ESMP to ESMpy

enhancement

• **: flake8 / pep8 cdms2
• **: Warning from numpy1.9.0 in ESMP_API.py and avariable.py
• **: periodicity warnings
• **: uvcdat conda channel highest cdms2 version is 2.8.1.
• **: PET0.ESMF_LogFile should be turned off
• **: Docstrings
• **: Update numpy to 1.10
• **: MaskedArrayFutureWarning Numpy 1.11 - does this require some cdms tweaks?

Merged Pull Requests

• #134: fix https reading issue

Known Bugs

Other

• variable loses mask after applying crossSectionRegrid
• cdms2 seg faults when using unknown ‘+rw’ mode for opening a file
• cdscan path needs a patch

vcs

Closed Issues

bug

• **: Portrait plot issues
• **: vcs does not respect geometry on newer mac XCode 8.3
• **: VCS/VTK warnings and UV-CDAT logo missing in pdf/ps output files
• **: Text location changes with textAsPaths setting
• **: text alignment seems a bit off
• **: gettextextent broken?
• **: boxfill missing value does not respect opacity
• **: vcs.Gfb.rename() seems to destroy the object that it’s renaming
• **: If masking reduces the bounds of a dataset, plots look incomplete.
• **: isofill broken
• **: doc strings PR introduced bug in test suite
• **: meshfill broken
• **: canvas.png writes a PNG with labels off if bg=0
• **: ‘.py’ extension on script functions not working

enhancement

• **: VCS PDF filesize is much larger than what you would get from MPL
• **: Multiple parallel coordinates (y-axis) on single plot
• **: x.show(‘crap’) could return a sorted list of valid options

Merged Pull Requests

Known Bugs

Other

• vcs window do not disappear
• vcs init seems to fail using ${HOME} correctly
• Black png returned when using a vnc session
• vcs seg fault on ubuntu 16.04 using regular not nox vtk

cdutil

Closed Issues

bug

• **: cdutil.region.domain: variable loses unit attribute
• **: Weight problems in cdutil.ANNUALCYCLE.climatology (daily data)

enhancement

• **: Docstrings

Merged Pull Requests

Known Bugs

2.8 Release Notes

VCS:

• Fix export svg
• Add test for BUG #26: If masking reduces the bounds of a dataset, plots look incomplete.
• utils.generate_time_labels(), wrong conversion to seconds?
• x.plot(s,bg=bg) does not output image
• Proposed new color names
• Legend offset new attribute
• System dependent outline
• Fix spaces flake8
• Fix bug with orthographic projection
• Fix for template name collision bug.
• corrected initil.attributes
• Fix flake8
• remove default parameter assignment on getcolors. Fixes #2097.
• BUG #1265: Fix datawc zoom-in for geographic projections.
• Viridis latest
• Remove trailing whitespace from utils.py
• All vcs docstrings updated merged
• fixes #2118
• Split repos
• Additional test for BUG #5: vtkPolyData::RemoveDeletedCells does not …
• Fix test suite vcs imports
• Improve put png
• Added test for drawLenged
• Docstring cleanup
• Docstring cleanup
• Adds support for gettextextent()
• BUG #1770: Display meshfill template elements through renderTemplate.
• BUG #1944: Rename line to linetype for isoline, unified1d and vector.
• allows user to set default range to use when calling getcolors
• Fixes #2, Gfb.rename().
• Fixes to queries.py documentation
• Split repos
• Revert “BUG #1265: Fix datawc zoom-in for geographic projections.”
• Fix isofill levels
• Improve put png
• VCS API Doc
• Parallel coord
• Documentation
• Fix PEP8 convention issues with VTKPlots
• Pcoords
• BUG #26: If masking reduces the bounds of a dataset, plots look incomplete
• patch : png compression level option from user
• fixed flake8

CDMS:

• fix issue where cyclical would fail for non numerical axes
• Numpy1 11
• add docs
• Adds basic .gitignore
• Tests!
• Np11
• add UVCDAT testing
• Ken drs file
• Fixmasterpush
• Np11
• got it to look into cdms repo to add tests

VCSAddons:

• added possibility to scratch text next to markes in legend functions
• Parallel coord

Build:

• need to pass -b to build cdat_info out of source

UV-CDAT GUI:

• Fixed issue where files were not caching properly due to use of URI and path
• Fixed single color handling for all graphics methods, added color picker widget for linecolor/markercolor on 1ds
• Fixed some issues with how dimensions were handled
• Fixed bug where deselecting a vcs cell would raise an exception
• Redesigned how time slider stuff is handled, severely improved code quality
• Fixed lack of plotting due to missing now having list values instead of int

2.6 Changelog

Closed Issues

Build

• Enhancement: update bUILD_MODE instructions
• Bug: CMake build issue on travis
• Bug: Issue with setup_runtime.csh
• Bug: GEOS5_sample.nc not copied to correct sample_data directory for OSX
• Bug: make -j8 seems to sometimes disable matplotlib
• Bug: Parallel build causing problems with egg installs overwriting easy-install.pth

Test Suite

• Enhancement: uvcdat testing checks too many images (#1943)

VCS

• Bug: isofill vcs bug (#2027)
• Bug: ratio=”autot” fails to correctly generate the initial ratio
• Bug: bad contouring algorithm
• Bug: autot tests seem to fail from master
• Bug: animation save does not preserve the colormap (#2028)
• Bug: Boxfill legend incorrect when there are fewer colors than levels (#1895)
• Enhancement: Enable postscript export to write text objects in addition to text as paths (shapes)

VTK

• Bug: vtk has hard links that seem to prevent anaconda libraries relocation

cdutil/genutil

• Bug: genutil broken in nightly

Merged Pull Requests

• #1756: Enforce CMake minimum version 2.8.12
• #1932: 2.4.1rc test
• #1933: merging master into release
• #1934: Release
• #1941: Allow unicode strings for subsetting.
• #1945: Update README.md
• #1951: Cdat web plot subsetting
• #1952: Cdscan importable
• #1956: Fix continents=0
• #1966: Click info point dataset
• #1967: Reenable autot_axis tests. Keep max Y to 500.
• #1968: Improve testing by moving common code to testing module
• #1970: Marked export to gs as no longer supported
• #1978: Vcs fix geometry instantiation
• #1983: BUG: Fix memory override for vtkContourFiler in isofillpipeline.
• #1987: updated crypto to latest version so it builds on Ubuntu 16
• #1988: Compute vector scaling correctly
• #1989: Fix flake8 warnings and a test generated file
• #1990: Orthographic
• #1991: Added missing graphics method types to creategraphicsmethod
• #1992: Added option to export text as object or path
• #2000: Fix regression for test_vcs_png_window_resize
• #2001: BUG: Use the geometry argument, if available, for background tests
• #2003: Fixes failing DV3D tests and VCS behavior
• #2005: BUG: Extend the isoline attribute list with the last value from the e…
• #2007: BUG: datawc does not work on a time axis.
• #2012: Part-1 of improved RST docs for VCS
• #2013: Updated cmake to use new location for legal and readme
• #2015: Conda build
• #2017: Fixed extends not working if you have a premade list for custom.
• #2025: Vcsaddons histo polar
• #2029: Cmake find activate
• #2030: Vtk update leak
• #2032: needed to duplicate yr fully in case the year starts in October for e…
• #2036: Generated png should have same name with baseline
• #2037: Fix wrong tuple instance condition for axis getitem call

Known Bugs

Other

• (python:26831): Gtk-WARNING **: Unable to find default local directory monitor type
• Conda channel nightly updates not up-to-date
• numpy.NewAxis broken
• cdms2.open fails on an xml file with “invalid” attributes
• ctest does not seem to post to cdash anymore
• vtk seg fault on (my) ubuntu 15.10
• DV3D/VCS plot error
• Unable to load Ensembles dimension from Grads Ctl file

2.4.1 Changelog

Closed Issues

Build

• Bug: vcs import error
• Enhancement: Update eofs to 1.1.0 (#1911)

VCS

• Bug: missing color does not support all of the new color syntaxes. (#1831)
• Bug: Custom continents don’t work (#1828)
• Enhancement: wide screen

cdms2

• Bug: cdms2 seg fault on some weird types (#1915)

Merged Pull Requests

• #1729: Ocgis
• #1752: several tweaks, mainly saving method results for re-use, to improve
• #1797: Adding a vagrant configuration for building with a GUI
• #1802: Update readme master
• #1803: Remove repo size
• #1806: Fit to viewport cleanup
• #1810: Uvcmetrics devel
• #1815: Issue1798 durack1 update matplotlib 1.5.0 to 1.5.1
• #1816: Issue1799 durack1 update scipy 0.16.1 to 0.17.0
• #1820: Issue 1801 old scr files
• #1821: On my computer with 2 very wide screens init default was super big
• #1827: Update vtk proj4 9 2
• #1829: BUG #1809: Error wrapping a curved grid with masking.
• #1830: Add test for BUG # 1728: wrapping data creates long cells
• #1841: Add nc_del_attr to Cdunif to allow attribute removal in netCDF files
• #1847: Fix macos inconsistency
• #1855: BUG #1849: Re-enable datawc for linear projection.
• #1862: BUG #1740: plotting with bg=0 produces labels off
• #1870: Mintics now properly support lists
• #1874: uri starting with file:// were not interpreted correctly
• #1875: Pcmdi only tools
• #1878: BUG #1811: Show point information for plots using geographic projecti…
• #1891: Revert “issue1539 durack1 update iPython 3.0.0 to 4.1.2”
• #1896: ENH: ratio=autot works for geographic projected datasets
• #1902: Build vcs without .egg by default
• #1904: BUG #1886: Polar projection does not change pole.
• #1908: Cleanup for conda and setuptools
• #1917: Fixed inconsistent test names and other related issues
• #1918: Added missing test file
• #1928: Allow canvas.plot to handle vcs addons
• #1932: 2.4.1rc test
• #1933: merging master into release
• #1934: Release

Known Bugs

Other

• running autot_title with setbgoutputdimensions leads to seg fault
• autot tests seem to fail from master
• ctest does not seem to post to cdash anymore
• make -j8 seems to sometimes disable matplotlib
• Boxfill legend incorrect when there are fewer colors than levels
• vtk seg fault on (my) ubuntu 15.10
• DV3D/VCS plot error
• animation save does not preserve the colormap
• CMake build issue on travis
• Unable to load Ensembles dimension from Grads Ctl file
• Parallel build causing problems with egg installs overwriting easy-install.pth
• ratio=”autot” fails to correctly generate the initial ratio
• Meshfill leaves extra display plots lying around

2.4 Changelog

New Features Documentation

Closed Issues

ACME

• Bug: average() indentation error

Build

• Bug: sample data doesn’t get re-downloaded if it’s deleted
• Bug: “This warning is for project developers” message during ccmake?
• Bug: Sample data is all over the place
• Bug: -DBUILD_PARALLEL=ON fails on mac (at least)
• Bug: cdms2 not building in current master
• Bug: runtest does not understand mpi -n arg (#1500)
• Bug: Error building pyOpenSSL on OSX
• Bug: CMake not able to find gfortran installed via apt-get
• Bug: SciPy fails to build on CentOS 6.6
• Bug: openssl cmake error on RHEA (#1756)
• Bug: Fonts not installed at the right location on Mac OSX
• Bug: pip/easy_install error in some build
• Bug: Fix travis pyexpat build time error (#1674)
• Bug: VTK build error not reported to CDash
• Bug: pep8 executable looked for in wrong place on mac (#1387)
• Bug: flake8 not properly added to repo (#1430)
• Bug: fetching uvcdat-testdata broken on mac
• Bug: older git checkout error
• Bug: system picks up wrong pip when building ipython and tornado
• Bug: build on Ubuntu 15.10
• Bug: iPython3.0 merged update not found in master branch
• Enhancement: Update cython to 0.22 (#1436)
• Enhancement: Update matplotlib to 1.4.3 (#1329)
• Enhancement: Update IPython to 3.0 (#1330, #1443)
• Enhancement: Update pip to 6.0.8 (#1382)
• Enhancement: Update scipy to 0.16.1 (#1654, #1467)
• Enhancement: Fix test suite for LEAN mode (#1578)
• Enhancement: Update python-seawater to 3.3.4 (#1687)
• Enhancement: CMake warning that might break things eventually (#1536)
• Enhancement: Configuring travis/buildbot testing to be more robust
• Enhancement: Configure travis to additionally test “full” builds
• Enhancement: Update pyspharm (#1444)
• Enhancement: Update vacumm to source from github (2.5.1 to 3.0.0) (#1685)
• Enhancement: Update FFmpeg to 2.5.3 (#1381)

DV3D

• Bug: Fix vcs3d failing test
• Bug: mac dv3d sample data put in different place (#1503)
• Bug: dv3d tests reverse baseline / test images
• Bug: (q)uit does not work correctly in a DV3D interactive canvas (exits python)
• Enhancement: DV3D keyword error

UVCDAT GUI

• Bug: Full screen plots do not work
• Bug: Plots break after removing a cell and then adding it again.
• Bug: vcs anim and multiple canvas
• Bug: generate range and pattern broken from GUI
• Bug: Warning: Stenciling is not enabled on Isoline
• Bug: GUI cannot switch dimensions
• Bug: Isoline Labels don’t show up initially in GUI
• Bug: slab sub-selecting not working in UVCDAT GUI. (#1637)
• Bug: Colormap in GUI broken
• Bug: uvcdat writing thousands of tempfiles to users’ .uvcdat directory
• Bug: paraview still seems to be needed via matplotlib
• Bug: Plots initially too big for plot window.
• Bug: clear seems to be not working on esgf search interface
• Bug: http get method in esgf browser, probably need to be replaced with proper wget script (#1637)
• Enhancement: animation frame not updated when runnnig vcs animation in gui (#1637)
• Enhancement: animation loop keeps going even after unchecking it
• Enhancement: Cosmetic Bug: dots in Scatter plot are hardly visible. (#1617)
• Enhancement: Error message that makes no sense when trying to open a file that doesn’t exists (from bookmarks for example) (#1662, #1394)
• Enhancement: Redirect all (i.e. non-Python) application output to log file (#1623)
• Enhancement: Provide UI option to control labels spacing

VCS

• Bug: vcs.Canvas.setantialiasing unusable (#1422)
• Enhancement: Labels are too close together (#1485)
• Bug: lambert proj appears to be broken?? (#1768)
• Bug: Meshfill + interact() leads to error message (#1769)
• Bug: hatches/patterns don’t work in vcs 2.0.beta (#1516)
• Bug: isofill broken for discontinued (#1735)
• Bug: Meshfill plot does not wrap for bounds outside 0-360
• Bug: vcs_test_init_open_sizing fails on small monitors
• Bug: Remove x.png size parameters ?
• Bug: animation does not work on projected plots (#1657)
• Bug: XvsY error (#1669, #1621)
• Bug: Contour labels are don’t show up in exported file (PDF)
• Bug: isolines GUI editor not connected (#1688)
• Bug: yname doesn’t change with autot
• Bug: Animation and Resizing causes issues (#1634)
• Bug: Resize Window Core Dump
• Bug: setting colormap on object seem to not be picked up (#1523)
• Bug: grabWindowPixmap() broken for QCDATWidget
• Bug: Patterns & Hatches on Boxfill, Isofill (#1582)
• Bug: Error when clicking on a_boxfill to get point values.
• Bug: renderTemplate needs list, gets None
• Bug: template.title.textorientation/table does not accept text object (#1509)
• Bug: Isofill Blank Spots on Solid with Indices/Levels (#1700)
• Bug: pattern are not wrapped around (#1690)
• Bug: vcs removeobject function broken
• Bug: New libx264/h264 library bug needs fix (#1592)
• Bug: Line width is inconsistent across platforms (#1360)
• Bug: x.close() brokn if more than one plot on
• Bug: Continents are off (#1706, #1717)
• Bug: Editing a label, rotate to ~311 degrees, open font menu -> segfault (#1514)
• Bug: bad error message if png output dir doesn’t exist (#1556)
• Bug: x.png(outFileName, width=XX, height=XX) doesn’t resize output file
• Bug: fillarea dos not respect transparency (#1733)
• Bug: polar plot in isofill is not an option and isoline polar plot has wrong tic marks
• Bug: can’t switch to portrait mode while in background mode (#1557)
• Bug: Saving an animation at 4 frames per second on mac creates green animation (#1564)
• Bug: canvas.getcolormapname behaviour changed (#1568)
• Enhancement: colormap need user level func to set colorindices (#1553)
• Enhancement: Isofill does not work with mercator if given lat coordinates values -90, 90 (the edges)
• Enhancement: Enable anti-aliasing ON by default and OFF for testing (#1442)
• Enhancement: turn antialiasing ON by default (and OFF in tests)
• Enhancement: VCS write metadata in image
• Enhancement: Provide a ‘transparent’ color for missing values (isofill/boxfill/etc… plots) (#1516)
• Enhancement: allow colors to define opacity
• Enhancement: allow user to reference color by string or rgba tuple
• Enhancement: EzTemplate object has no close function (#1591)
• Enhancement: setantialiasing not working if set too early

VTK

• Bug: size keyword argument has no effect in vcs.init (#1548, #1562, #1563)

VisTrails

• Bug: CDMS3DPlot -> CDMSCell connections are invalid

cdms2

• Bug: cdms2 netcdf use parallel flag fails
• Bug: ESMF regrid problem (#1574)
• Bug: problem with opendap file
• Bug: Problems writing netcdf data - _FillValue error
• Bug: cdms2 cannot open files if xml generated by cdscan contains different base urls
• Bug: g2clib makefile typo
• Bug: MV2.array(0.).fill_value is NaN! (#1508)
• Enhancement: cdms2.write can’t write a _FillValue attribute? (#1524)
• Enhancement: createVariableCopy() upcasting variables open from cdml catalog files. (#1511)
• Enhancement: try different opendap url to bypass what seems to be firewall issues on opendap ctest
• Enhancement: remove AutoAPI (#1369)
• Enhancement: enable netcdf parallel option (#1388)

cdutil/genutil

• Bug: cdutil climos fail on file variables.

Merged Pull Requests

• #993: Fix git clone & update helper scripts
• #1261: Fix run tests buildbot
• #1321: Issue 1312 tag repos
• #1342: Sync release
• #1348: Vtk master bump
• #1357: Vtk master bump
• #1389: Developers documentation
• #1390: Sample data location updated
• #1392: New test for 11 & 12.
• #1393: Added a sleep for onscreen rendered tests
• #1402: Remove creation of redundant file in source tree by test
• #1403: Make tests fail if baselines not found
• #1404: Fix tag detection for git clone/update scripts
• #1418: Add flake8 test for vcs.
• #1421: Add flake8 test for xmgrace.
• #1426: Vtk ui test coverage
• #1435: Issue1108 durack1 update spyder 2.3.4 to 2.3.5.2
• #1440: R and rpy2
• #1449: keep track of temporry elets added hen plotting
• #1452: Fix CONTRIBUTING.md
• #1456: Bugfixes
• #1457: Allocate 512 char to save error message.
• #1478: Issue1477 durack1 update spyder 2.3.5.2 to 3.0.0
• #1480: no reason anymore to force pip at low version
• #1488: updated json
• #1490: Ansible vagrant install
• #1492: get cmor via git repo
• #1493: Pip no egg
• #1496: Skipped some unnecessary renders
• #1504: typo in rpy2 test
• #1507: Fix library problem when compiling python 2.7 and using VIM 7.4. Add …
• #1513: Add PYPTHONPATH explicitly to cmake to make sure the right CYTHON is …
• #1515: Added URI to cdmsfile objects (courtesy of @doutriaux1)
• #1518: RPM for 2.2.0
• #1522: Force build to use our Cython
• #1533: on the macbot it used to pick system png rather than XQuartz
• #1534: Skip label test for redhat only
• #1535: Pngupdate
• #1540: issue1538 durack1 update Cython 0.22.1 to 0.23.3
• #1541: issue1539 durack1 update iPython 3.0.0 to 4.0.0
• #1551: Skipping this test for RH6 as well
• #1552: Handle mercator infinity projection at 90,-90
• #1554: adds a warning about removing .dodsrc file
• #1558: disable testDistArray6Pes for 2.4
• #1559: new g2clib that allows to build libcdms w/o png
• #1560: Fix vector plots
• #1561: Add windfield dependency to rpy2 getting rid of parallel installation…
• #1565: Fix cmake binary download location
• #1572: Workaround for XCode7 and 10.11 SDK
• #1587: Flake8 thermo
• #1596: wrong baseline src file names
• #1600: set non parallel flag for cdscan
• #1601: Cdmsopenparallel
• #1602: Fixed doWrap method for vectors
• #1604: Issue png size updated
• #1605: Fix pattern 9
• #1615: turned off the keep flag that prevented to test results
• #1616: Fix TextCombined used wrong
• #1618: Made ESMF fail the build when fortran is the wrong version
• #1647: Fix compilation on Ubuntu with gcc 5.2.1
• #1652: issue1549 durack1 update Matplotlib 1.4.3 to 1.5.0
• #1653: issue1538 durack1 update Cython 0.23.3 to 0.23.4
• #1656: Set ffmpeg root when building ffmpeg
• #1658: load texttables and textorientations and text markers first
• #1661: Use cmake to download uvcmetrics test data
• #1667: Window flickering when png
• #1670: Pattern size scaling
• #1678: Continents & Continent Lines
• #1689: ENH: Add the ability to write/read PNG metadata
• #1691: Fixed cmake warning during configure step
• #1692: fix configure arguments separator
• #1693: Colormaps
• #1695: Revert “Fix #1539 - Update iPython 3.0.0 to 4.0.0”
• #1696: Now will work if there is no .uvcdat directory
• #1697: Altered some tests to ensure geometry
• #1699: fixed issue where old scr colormap file would not load opacity
• #1703: fixed tag point for external repos
• #1705: Fix rpm
• #1708: Increased threshold for pattern tests to allow meshfill to pass
• #1709: Fix initial size
• #1712: Fixed some bugs with continents line
• #1713: Fixed two bugs with matplotlib colormap import
• #1724: Fixed setcolorcell in vcs.utils
• #1727: Moved/renamed license
• #1731: Issue 1730 mesh with missing vertices
• #1736: Duplicate longitude wrap
• #1741: Noticklabelonellipticalprojections
• #1742: Revert “Check whether OpenSSL library and/or headers not found”
• #1744: BUG #1739: fitToViewport uses dataset bounds instead of recomputing them
• #1755: Fixes issue with incorrect URIs for opendap urls
• #1757: Fixed conversion to base64 string
• #1772: BUG: proj4 over option causes problems with polar projections
• #1774: Revert “BUG: proj4 over option causes problems with polar projections”
• #1778: Irregular cut wrap
• #1793: Got rid of screen size logic from test
• #1794: Fixed bug that was breaking continents when set at canvas level
• #1802: Update readme master

Known Bugs

Critical

• master fails some tests on RH6/CentOS6
• creating pngs in background mode leaks memory

Other

• seg fault on a lambert projection
• can’t read some old vcs scr files
• Disable projected click, fix time values
• ratio=”autot” fails to correctly generate the initial ratio
• Fit to viewport needs updating for continent outline
• proj4 acting up on macs and ubuntu mesa
• Meshfill leaves extra display plots lying around
• test_vcs_animate_projected_meshfill_mollweide.png is not wrapped
• var.squeeze() truncates axis information
• CDMS2/MV2.newaxis doesn’t work
• cdms2.getGrid()/setGrid() doesn’t work
• Fix memory leak in cdtime
• Meshfill plot with Mercator projection issue
• Weight problems in cdutil.ANNUALCYCLE.climatology (daily data)
• projections still broken
• MPI builds and Python multiprocessing
• iso plot failure
• VCS/VTK warnings and UV-CDAT logo missing in pdf/ps output files
• cdscan hang
• Catch cdscan errors without triggering runtime failures
• Bad rendering of aeqd projection
• vcs.plot(iso) creates text object that are not removed after clear
• can’t delete file attribute
• cdms2 can only open cdscanned http files from the directory the file is at

2.2 Changelog

Closed Issues

ACME

• Bug: No usch text combined (#1107)
• Bug: invalid framebuffer operation
• Bug: average() indentation error (#1050)

Build

• Bug: esmp install broken (#982)
• Bug: Pyclimate not built with build mode all (#1075)
• Bug: mac build broken (#998, #995)
• Bug: test failing because mean is different (#1076)
• Bug: Building on OS X 10.10.2
• Bug: git_update.sh fails if updating to a tag
• Bug: ctest ‘fails’ if python has not been run interactively at least once (anonymous logging problem) (#1102)
• Bug: Out of source detection is broken
• Bug: metrics not build if CDAT_BUILD_GUI=OFF
• Bug: SciPy fails to build on CentOS 6.6
• Bug: scipy fails to build without -D__ACCELERATE__ (#1165)
• Enhancement: try to detect protocol for user
• Enhancement: no need for git to check ssl
• Enhancement: Several warnings during the cmake stage that should be cleaned? (#1062)
• Enhancement: Update udunits to 2.2.x branch
• Enhancement: Update netcdf to 4.3.2 (#972)
• Enhancement: Update matplotlib to 1.4.2 (#921)

DV3D

• Bug: Slider issues with Hovmuller plot and vector slicer. (#1147)
• Bug: 3D_Scalar Unexpected Error
• Bug: dv3d list broken (#1287)

Documentation

• Bug: UV-CDAT docs website: cdms/cdtime manual page problem
• Enhancement: Document for manual testing of GUI

UVCDAT GUI

• Bug: Traceback on cell creation
• Bug: .vt doesn’t have all the steps
• Bug: Cython classmethod_utility_code used in VisTrails vtDVD3D
• Bug: GUI cannot load variable
• Bug: Refresh problem with 2.1
• Bug: Error while plotting meshfill plot
• Bug: Deleting all variables doesn’t work if one variable is derived from another (in GUI).
• Enhancement: animation processing message
• Enhancement: uvcdat “executable” should unset env or it might be using the “Wrong” python

VCS

• Bug: lines drawn behind data
• Bug: The plotting of 120 plots and clearing is taking too long
• Bug: Cannot animate Isofill (#1142)
• Bug: ctest might fail because of too many digits on mean
• Bug: animation boxfill broken (#1236)
• Bug: isoline labels text color broken
• Bug: wrapping labels seems to still not work (#1172)
• Bug: Error on meshfill (#1247)
• Bug: default boxfill wrong lat labels (#965, #962)
• Bug: in some case the continents are not plotted properly (polar proj with north pole) (#1022)
• Bug: boxfill plots don’t pick proper interval
• Bug: markers not drawn if x world coordinate reversed (#970)
• Bug: Control + Click doesn’t work in GUI (#1169)
• Bug: Ext1 and Ext2 are rendering incorrectly (#1209)
• Bug: clear canvas while animation running in GUI doesn’t seem to stop it (#1207)
• Bug: animation vcs speed slider seem to have no effect (#1202)
• Bug: isofill masked does not align with isofill cells (#1171)
• Bug: Isoline labels broken
• Enhancement: animate.save() print statements (#1121)
• Enhancement: text rotation in VTK different from vcs way (#1013)
• Enhancement: Fix vcs interact warnings
• Enhancement: mean on vcs plots should use cdutil.averager if possible (#1028)
• Enhancement: time slider should be disabled when running animation (#1201)

VTK

• Bug: isolines labels are different between mac and linux

cdms2

• Bug: load and close with large data files doesn’t work

cdutil/genutil

• Bug: cdutil times criteriaargclim is useless and leads to error (#985)

Merged Pull Requests

• #747: Fixing UVCDAT runtime environment
• #944: Issue942 durack1 python279 update
• #951: Vcs3D features for v2.1.1
• #971: Fixes exception from VTKVCSBackend
• #973: Build in source
• #974: System python updated
• #975: Update cmake to version 3.1 on travis before building
• #979: Line duplicate points fix
• #987: Create an option to enable vtkweb
• #988: Setting the correct PYTHON_SITE_PACKAGES_PREFIX on Apple
• #990: Merge remote-tracking branch ‘origin/fix-quotes-updated’ into release
• #992: Updated packages reference
• #993: Fix git clone & update helper scripts
• #994: Checking for http and https as well now
• #1005: do not turn off metrics when no GUI
• #1014: Update background color
• #1038: Optimize vtk
• #1047: 1. In the section involving ‘allaxesdummy’, where a dummy variable is cr…
• #1052: should address part of #729
• #1067: Line duplicate points fix
• #1069: Removes a warning
• #1072: Issue421 durack1 add seawater packages
• #1073: Issue423 durack1 add vacumm package
• #1089: Issue423 durack1 fix vacumm dependencies
• #1090: Remove pycharm and unnecessary README files
• #1091: Vcs2d interactions updated
• #1098: Fixes autot resizing when configurator instantiated
• #1110: Now we can build on Yosemite
• #1113: VCS2D Animation while Interacting
• #1114: Added files
• #1115: adding ipython created cyclical deps
• #1119: Isofill on pointdata struct grid
• #1123: VTK can’t seem to be able to use mac system headers
• #1135: Workaround for #1093
• #1138: Vcs3 d fix 2.2 interaction problems
• #1144: Issue 587 projected ticks
• #1145: Adding Dockerfiles for generating docker images
• #1153: Add vcs keywords
• #1154: Fix missing displays for animation/interaction
• #1156: Fix error in getCoordType
• #1157: vcs3D-return_to_shell_on_q_keypress_event
• #1159: Fix rc1 tests
• #1161: VCS2D Animation Speedup
• #1164: Time slider upgrade
• #1167: Target will now detach when configurator detaches
• #1168: Fixes ubuntu error that showed up for charles
• #1173: Changed 2D animation to use same type of animation speed as 3d
• #1177: Fixed some VTK error messages that showed up when ending configure
• #1178: Issue 1158 auto magic time labels
• #1179: Fix ratio resizing issue
• #1182: pickle would not work
• #1184: 3D support for vcs.update
• #1185: vtk_ui.Button tests
• #1190: Fix for clear and close for DV3D plots
• #1206: Made slider jump instead of animate, added test
• #1216: Newdiagtest
• #1218: New test, for spaghetti/multiline plots (plot set 3).
• #1219: Salinity
• #1221: Boxfill bug branch clean up
• #1225: Unstructured plots
• #1226: Added message in setup_runtime scripts
• #1227: Allow open/interact without plotting anything
• #1238: Newdiagstes charles
• #1240: Fixes typo in CDMS raise statements
• #1243: Fixes typo in CDMS raise statements
• #1244: Pressing the “i” key makes button disappear (and other issues)
• #1246: Colorpicker now uses manager correctly
• #1249: Meshfill animation
• #1255: Marker deletion
• #1257: Merge colorpicker changes into release
• #1258: Colorpicker renderer selection
• #1261: Fix run tests buildbot
• #1262: Update master
• #1267: Issue 903 turn off paraview
• #1269: Vcs3 d fix release issues
• #1270: Fixes more typos in raise statements
• #1273: Toolbar layout fixes
• #1296: Sync master
• #1298: Add lapack to libcf deps
• #1307: Fixed the ordering of images for regression testing
• #1316: Final commits to make buildbot pass

Known Bugs

Critical

• Taylor diagrams (plot set 14)
• Resize Window Core Dump

Other

• gui python script extensions are written as string when they should be boolean
• Fix vcs3d failing test
• dv3d cannot go back into interact mode
• dv3d plotting ad changing attributes breaks dv3d
• setting colormap on object seem to not be picked up
• polar plot for sub zones seems to not work
• ESMF regrid problem
• Continents are off
• x/yaxisconvert not respected anymore.
• x.close() brokn if more than one plot on
• (q)uit does not work correctly in a DV3D interactive canvas (exits python)
• cdtime and big hours
• -DBUILD_PARALLEL=ON fails on mac (at least)
• The vectors are not drawn when using projection other than plat-caree.
• Unable to write unsigned int8 variable in netcdf4 file (non-netcdf3 type)
• Fix setup_runtime.sh script for DMG
• system picks up wrong pip when building ipython and tornado

2.1 Changelog

Closed Issues

Build

• Bug: On Mac Udunits fails because of flex not found
• Bug: CMOR doesn’t build
• Bug: visit_vtk failed to build: missing vtkPolyDataToPolyDataFilter.h
• Bug: git_update.sh fails if updating to a tag

DV3D

• Enhancement: Change template name from xyt to Hovmoller-3D
• Bug: 3D_Scalar plot (xyt) gives errors plotting 3D variable with no time dimensions.
• Bug: Plotted a 3D-scalar, and the vertical level reported in the heading appears to be upside-down.
• Bug: Two UV-CDAT Labels in the Lower Right for 3D VCS Plots
• Bug: ubuntu animations aren’t saved

UVCDAT GUI

• Bug: rename colormap does not put it in list of available colormaps
• Enhancement: Error messages when launching uvcdat on Rhea.

VCS

• Bug: meshfill missing color not respected
• **Bug: Scatter plot labels
• Bug: x.showbg() does not work in 2.0.0
• Bug: x.interact() should print an error message when no canvas is open
• Bug: cleanup EzTemplate
• Bug: meshfill plot broekn with bg=0
• Bug: continents chopped
• Bug: yxvsx plot a black screen when no text and box1.priority = 0
• Bug: x.clear does not do anything.
• Bug: boxfill/isofill missing attrbute does not change coor of missing
• Bug: VTK not mapping?
• Bug: templates do not save associated texttable/orientation
• Bug: oned plots wrong when levels are flipped
• Bug: Can’t load data in uvcdat 2.0.0 ! (#852)
• Bug: xname and yname doesn’t work
• Bug: boxfill leve_1 level_2 reassigned
• Bug: default boxfill wrong lat labels
• Bug: isoline pure numpy fails (#929)
• Bug: template rescale could move things too far and lead to errors
• Enhancement: drawing of colorbar in vcs too slow
• Enhancement: white bg by default
• Enhancement: Blank png: x.png does not set the alpha/transparency info correctly !

VTK

• Bug: Contours colored wrong when data has a wide range

VisTrails

• Bug: uvcdat script broken

cdms2

• Enhancement: convert cdtime object to datetime

cdutil/genutil

• Bug: full averaging weirdness

Merged Pull Requests

• #748: Removes scripts from images/ directory
• #791: Fixes BUILDINSOURCE detection
• #827: Vcs dv3d separate plot constituents updated
• #828: Typo when disabling a package
• #831: Patches Python to remove global OSX packages
• #833: Makes missing GIT_PROTOCOL an error
• #835: Makes git_update.sh handle detached heads
• #836: Fixes typo in vistrails_external.cmake
• #904: Issue 898 vertical flipped monotonic decreasing
• #905: Issue 691 interact mac broken
• #907: Vcs3 d fix z axis problems
• #912: Vcs3 d fix animation exception
• #936: update images for dv3d_hovmoller_test and dv3d_slider_test
• #940: Fix error causing 3D plots to hang

2.0 Changelog

Closed Issues

Build

• Bug: setup_runtime.sh needs to be sourced with full path
• Bug: some regrid test try to import matplotlib even though they don’t really need it
• Bug: VTK doesn’t build (freetype headers problem)
• Bug: Building on Mac OS X 10.9.4 doesn’t locate sqlite3 (no build error)
• Bug: mac os 10.8/10.9
• Bug: CDAT_BUILD_MODE=ALL does NOT build ALL
• Bug: uvcdat build needs QMake even for DEFAULT and no GUI
• Enhancement: sciFuncs submodule needs to be put in our source code,
• Enhancement: Binaries release for 2.0

UVCDAT GUI

• Bug: color map in GUI doesn’t work
• Bug: uvcdat gui vcs plots do not stick in spreadsheet
• Bug: animation auto min/max is broken
• Bug: Adjusting color map is broken
• Bug: vcs windows do not stick in spreadsheet

VCS

• Bug: possible isofill issue
• Bug: test set_opt_polar does not plot in bg
• Bug: boxfill as a .list() that needs to be removed
• Bug: kill uvcdat gui middle of animation generating leads to many vtk errors
• Bug: yx datawc_y1, y2 not respected anymore….
• Bug: animations now need PyQt4 old code seems broken
• Bug: flip does not work when missing values
• Bug: VCS won’t plot when every value is exactly zero
• Bug: Close Does Not Work
• Bug: The “clear” does nothing.
• Bug: colormap does not stick on animation
• Bug: VTKPlots.plotVectors points/attributes length mismatch
• Bug: x.show missing
• Bug: Isofill does not work with polar coordinates
• Bug: boxfill draws outside range
• Bug: boxfill not fully plotted (lat bit white)
• Bug: test_dump_json broken
• Bug: x.interact() fails in vcs (None object)
• Bug: inverted levels do not plot properly
• Bug: wrapping in projection not quite working
• Bug: Scatter plot won’t plot the scatters
• Bug: meshfill does not seem to mask
• Bug: X and Y axis lables (xname, yname) won’t show up on for any graphics method on the plot
• Bug: boxfill does NOT show all data
• Bug: markers are stretched too much when x and y scales are too different
• Bug: vcs init fails if no initial.attributes
• Bug: Test cdms_load_and_plot_axis_variable fails
• Enhancement: read new json formatted initial file attribute
• Enhancement: remove setcolormap warning
• Enhancement: easily removable error warning when saving to new json file

VisTrails

• Bug: vistrails module uvcdat_cdms missing
• Bug: isoline plots don’t plot on first try

cdms2

• Enhancement: Read ACME test data

Merged Pull Requests

• #739: Vcs3d record animation